If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ), 'gf_id' => 'HOM05D000923', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000923' ), 'data_identifier' => 'HOM05D000923', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000923', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '652', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31920' => 'bna', 'A01p40830' => 'bna', 'A05p00400' => 'bna', 'A07p33300' => 'bna', 'A10p02710' => 'bna', 'Aa31LG1G20550' => 'aar', 'Aa31LG1G28840' => 'aar', 'Aa31LG2G3010' => 'aar', 'Aa31LG5G15000' => 'aar', 'Aa31LG8G9620' => 'aar', 'Aa31LG9G2820' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1882' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5203' => 'aag', 'Actinidia03302' => 'ach', 'Actinidia03303' => 'ach', 'Actinidia04459' => 'ach', 'Actinidia06780' => 'ach', 'Actinidia08544' => 'ach', 'Actinidia14034' => 'ach', 'Actinidia14035' => 'ach', 'Actinidia21432' => 'ach', 'Actinidia30366' => 'ach', 'Actinidia40067' => 'ach', 'Ah.04g163330' => 'amhyb', 'Ah.06g191970' => 'amhyb', 'Ah.08g210630' => 'amhyb', 'Ah.15g090950' => 'amhyb', 'AL1G13910' => 'aly', 'AL2G24060' => 'aly', 'AL3G14600' => 'aly', 'AL3G37750' => 'aly', 'AL4G38910' => 'aly', 'Aqoxy2G02871' => 'aox', 'Aqoxy2G03607' => 'aox', 'Aqoxy3G00627' => 'aox', 'Aqoxy5G00281' => 'aox', 'Aqoxy6G02816' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MYI9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2H77W4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8K9FRI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C3DRVP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FW6W1M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IH9T3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NK5JY0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QCZR2J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SY3F7W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L8L6' => 'arhy', 'AT1G04310' => 'ath', 'AT1G66340' => 'ath', 'AT2G40940' => 'ath', 'AT3G04580' => 'ath', 'AT3G23150' => 'ath', 'ATR0680G049' => 'atr', 'ATR0763G147' => 'atr', 'Atru.chr2.889' => 'acertr', 'Atru.chr4.2145' => 'acertr', 'Atru.chr5.1087' => 'acertr', 'Atru.chr9.1581' => 'acertr', 'AUR62001081' => 'cqu', 'AUR62002259' => 'cqu', 'AUR62004879' => 'cqu', 'AUR62008714' => 'cqu', 'AUR62008716' => 'cqu', 'AUR62015476' => 'cqu', 'AUR62025518' => 'cqu', 'AUR62028548' => 'cqu', 'AUR62033500' => 'cqu', 'AUR62043483' => 'cqu', 'AUR62044322' => 'cqu', 'BcaB03g15274' => 'bca', 'BcaB04g20468' => 'bca', 'BcaB04g21364' => 'bca', 'BcaB08g35044' => 'bca', 'BcaC05g24453' => 'bca', 'BcaC05g29931' => 'bca', 'BcaC07g36917' => 'bca', 'BcaC08g46062' => 'bca', 'BcaC08g46067' => 'bca', 'BcaC09g47793' => 'bca', 'BcaC09g49256' => 'bca', 'BNapus_Darmor_BZH_scaffold_78p00880' => 'bna', 'BolC1t04038H' => 'bol', 'BolC1t05740H' => 'bol', 'BolC4t21674H' => 'bol', 'BolC5t29029H' => 'bol', 'BolC5t34922H' => 'bol', 'BolC6t39056H' => 'bol', 'BraA01t03318Z' => 'bra', 'BraA01t04519Z' => 'bra', 'BraA05t19038Z' => 'bra', 'BraA07t30961Z' => 'bra', 'BraA10t42540Z' => 'bra', 'C01p40800' => 'bna', 'C04p00310' => 'bna', 'C05p02500' => 'bna', 'C05p62690' => 'bna', 'C06p39630' => 'bna', 'C06p39680' => 'bna', 'C06p39720' => 'bna', 'C08p01020' => 'bna', 'CAN.G1003.9' => 'can', 'CAN.G1256.8' => 'can', 'CAN.G1465.3' => 'can', 'CAN.G1969.1' => 'can', 'CAN.G374.1' => 'can', 'CAN.G473.148' => 'can', 'CAN.G793.1' => 'can', 'CAN.G862.61' => 'can', 'CAN.G92.30' => 'can', 'CANSAT25G1618' => 'cansat', 'CANSAT35G0431' => 'cansat', 'CANSAT78G1715' => 'cansat', 'CARHR003640' => 'chi', 'CARHR058220' => 'chi', 'CARHR078760' => 'chi', 'CARHR099080' => 'chi', 'CARHR104900' => 'chi', 'CARHR142920' => 'chi', 'CARHR213370' => 'chi', 'Carub.0001s0350' => 'cru', 'Carub.0002s1235' => 'cru', 'Carub.0003s0373' => 'cru', 'Carub.0003s2336' => 'cru', 'Carub.0004s2325' => 'cru', 'Ca_09193_v3' => 'car', 'Ca_09812_v3' => 'car', 'Ca_09988_v3' => 'car', 'Ca_11958_v3' => 'car', 'Ca_27322_v3' => 'car', 'CBR_g11036' => 'cbr', 'CBR_g11041' => 'cbr', 'CBR_g11043' => 'cbr', 'CBR_g11044' => 'cbr', 'CBR_g11900' => 'cbr', 'CBR_g20397' => 'cbr', 'Cc01_g21110' => 'ccan', 'Cc02_g09070' => 'ccan', 'Cc03_g05070' => 'ccan', 'Cc05_g10220' => 'ccan', 'CDE01G0739' => 'cde', 'CDE02G4639' => 'cde', 'CDE09G1376' => 'cde', 'CDE12G0727' => 'cde', 'Cfa006320' => 'cfa', 'Cfa008356' => 'cfa', 'Cfa012295' => 'cfa', 'Ciclev10004385m.g' => 'ccl', 'Ciclev10018972m.g' => 'ccl', 'Ciclev10019003m.g' => 'ccl', 'Ciclev10019132m.g' => 'ccl', 'CiPaw.01G188400' => 'cil', 'CiPaw.02G115300' => 'cil', 'CiPaw.07G077400' => 'cil', 'CiPaw.07G112400' => 'cil', 'CiPaw.11G074700' => 'cil', 'CiPaw.11G074800' => 'cil', 'CiPaw.12G054500' => 'cil', 'ClCG05G004500' => 'cla', 'ClCG09G005500' => 'cla', 'ClCG11G011170' => 'cla', 'COL.COLO4_15420' => 'col', 'COL.COLO4_15820' => 'col', 'COL.COLO4_17409' => 'col', 'COL.COLO4_23303' => 'col', 'Cpa.g.sc151.32' => 'cpa', 'Cpa.g.sc2388.2' => 'cpa', 'Cpa.g.sc44.97' => 'cpa', 'Cpa.g.sc84.52' => 'cpa', 'CsaV3_2G009260' => 'csa', 'CsaV3_3G012390' => 'csa', 'CsaV3_7G029600' => 'csa', 'CSS0000918' => 'camsi', 'CSS0002958' => 'camsi', 'CSS0007944' => 'camsi', 'CSS0011184' => 'camsi', 'CSS0018101' => 'camsi', 'CSS0020972' => 'camsi', 'CSS0023519' => 'camsi', 'CSS0025037' => 'camsi', 'CSS0033011' => 'camsi', 'CSS0044928' => 'camsi', 'CSS0049886' => 'camsi', 'DCAR_002177' => 'dca', 'DCAR_002338' => 'dca', 'DCAR_002862' => 'dca', 'DCAR_012373' => 'dca', 'DCAR_012374' => 'dca', 'DCAR_017564' => 'dca', 'DCAR_030732' => 'dca', 'Dinv10042' => 'din', 'Dinv14627' => 'din', 'Dinv17050' => 'din', 'Dinv29891' => 'din', 'Dinv33605' => 'din', 'Dinv42994' => 'din', 'Dinv43103' => 'din', 'Dinv44654' => 'din', 'Dinv44683' => 'din', 'Duzib052G0543' => 'dzi', 'Duzib128G1827' => 'dzi', 'Duzib133G0591' => 'dzi', 'Duzib138G1057' => 'dzi', 'Duzib151G0509' => 'dzi', 'Duzib187G2006' => 'dzi', 'Duzib212G0183' => 'dzi', 'Duzib212G0184' => 'dzi', 'Duzib213G0205' => 'dzi', 'Duzib268G0841' => 'dzi', 'ECA232G3698' => 'eca', 'ECA233G5807' => 'eca', 'ECA236G1712' => 'eca', 'ECA240G0686' => 'eca', 'ECA246G1852' => 'eca', 'ECA248G0436' => 'eca', 'EL10Ac3g05907' => 'bvu', 'EL10Ac4g09053' => 'bvu', 'EL10Ac7g16933' => 'bvu', 'EL10Ac7g17576' => 'bvu', 'Eucgr.H03145' => 'egr', 'Eucgr.H04259' => 'egr', 'Eucgr.J02086' => 'egr', 'Eucgr.K03513' => 'egr', 'FAN05G2488' => 'fan', 'FAN05G4638' => 'fan', 'FAN09G3535' => 'fan', 'FAN12G3760' => 'fan', 'FAN14G3757' => 'fan', 'FAN15G2592' => 'fan', 'FAN17G0954' => 'fan', 'FAN19G0146' => 'fan', 'FAN20G3030' => 'fan', 'FAN22G0269' => 'fan', 'FAN23G1720' => 'fan', 'FAN24G0228' => 'fan', 'FAN26G0526' => 'fan', 'FAN27G0671' => 'fan', 'FAN28G2141' => 'fan', 'FAN28G2607' => 'fan', 'FvH4_1g23240' => 'fve', 'FvH4_1g23241' => 'fve', 'FvH4_2g26120' => 'fve', 'FvH4_4g03030' => 'fve', 'FvH4_6g02340' => 'fve', 'Glyma.03G216700' => 'gma', 'Glyma.03G251700' => 'gma', 'Glyma.09G002600' => 'gma', 'Glyma.10G008500' => 'gma', 'Glyma.10G167300' => 'gma', 'Glyma.10G188500' => 'gma', 'Glyma.12G241700' => 'gma', 'Glyma.18G068250' => 'gma', 'Glyma.18G069300' => 'gma', 'Glyma.18G069351' => 'gma', 'Glyma.18G069802' => 'gma', 'Glyma.19G213300' => 'gma', 'Glyma.19G249100' => 'gma', 'Glyma.20G087000' => 'gma', 'Glyma.20G202200' => 'gma', 'Glyma.20G221800' => 'gma', 'Gohir.A01G041400' => 'ghi', 'Gohir.A01G041500' => 'ghi', 'Gohir.A02G037000' => 'ghi', 'Gohir.A04G047100' => 'ghi', 'Gohir.A09G031388' => 'ghi', 'Gohir.A09G224400' => 'ghi', 'Gohir.A11G112900' => 'ghi', 'Gohir.A11G251000' => 'ghi', 'Gohir.A12G128400' => 'ghi', 'Gohir.D01G028800' => 'ghi', 'Gohir.D02G043500' => 'ghi', 'Gohir.D05G333100' => 'ghi', 'Gohir.D09G226200' => 'ghi', 'Gohir.D11G117900' => 'ghi', 'Gohir.D11G261500' => 'ghi', 'Gohir.D12G132000' => 'ghi', 'Gorai.002G038300' => 'gra', 'Gorai.004G272700' => 'gra', 'Gorai.005G047900' => 'gra', 'Gorai.006G247800' => 'gra', 'Gorai.007G126300' => 'gra', 'Gorai.007G280100' => 'gra', 'Gorai.008G143100' => 'gra', 'Gorai.009G358200' => 'gra', 'GSVIVG01024904001' => 'vvi', 'GSVIVG01027723001' => 'vvi', 'GSVIVG01028053001' => 'vvi', 'GSVIVG01036213001' => 'vvi', 'GSVIVG01038085001' => 'vvi', 'HanXRQChr01g0000941' => 'han', 'HanXRQChr03g0092271' => 'han', 'HanXRQChr05g0147681' => 'han', 'HanXRQChr06g0165941' => 'han', 'HanXRQChr06g0167711' => 'han', 'HanXRQChr12g0378881' => 'han', 'HanXRQChr12g0386201' => 'han', 'HanXRQChr13g0425501' => 'han', 'HanXRQChr17g0533471' => 'han', 'Haze_04470' => 'cav', 'Haze_08433' => 'cav', 'Haze_11328' => 'cav', 'Hma1.2p1_0417F.1_g148790' => 'hma', 'Hma1.2p1_0494F.1_g165480' => 'hma', 'Hma1.2p1_1310F.1_g274820' => 'hma', 'Hma1.2p1_1984F.1_g310040' => 'hma', 'HPP92_008397' => 'vpl', 'HPP92_008408' => 'vpl', 'HPP92_016955' => 'vpl', 'Hund04546' => 'sun', 'Hund05452' => 'sun', 'Hund11867' => 'sun', 'Hund18214' => 'sun', 'Hund19949' => 'sun', 'Hund22147' => 'sun', 'Lalb_Chr02g0150591' => 'lal', 'Lalb_Chr03g0033751' => 'lal', 'Lalb_Chr03g0037051' => 'lal', 'Lalb_Chr04g0259871' => 'lal', 'Lalb_Chr18g0044061' => 'lal', 'Lalb_Chr19g0131841' => 'lal', 'Lalb_Chr21g0309341' => 'lal', 'Lj1A1182T92' => 'lonja', 'Lj1g0003024' => 'lja', 'Lj1g0014358' => 'lja', 'Lj1g0016132' => 'lja', 'Lj2C1199G12' => 'lonja', 'Lj2C39T5' => 'lonja', 'Lj2C39T6' => 'lonja', 'Lj3A796T21' => 'lonja', 'Lj3g0025459' => 'lja', 'Lj5g0004883' => 'lja', 'Lj5g0015484' => 'lja', 'Lj6A659T32' => 'lonja', 'Lj6g0006586' => 'lja', 'Lsat_1_v5_gn_0_18100' => 'lsa', 'Lsat_1_v5_gn_3_122401' => 'lsa', 'Lsat_1_v5_gn_3_6160' => 'lsa', 'Lsat_1_v5_gn_5_72101' => 'lsa', 'Lsat_1_v5_gn_8_164760' => 'lsa', 'Manes.01G222900' => 'mes', 'Manes.03G167400' => 'mes', 'Manes.07G101500' => 'mes', 'Manes.08G137300' => 'mes', 'Manes.09G149700' => 'mes', 'Manes.10G045000' => 'mes', 'Manes.15G037700' => 'mes', 'Mapoly0001s0284' => 'mpo', 'Mapoly0028s0036' => 'mpo', 'Mapoly0036s0126' => 'mpo', 'MBI05_g35188_MAGBIO' => 'mbi', 'MBI18_g20361_MAGBIO' => 'mbi', 'MBI18_g25088_MAGBIO' => 'mbi', 'MBI19_g08247_MAGBIO' => 'mbi', 'MD00G1114300' => 'mdo', 'MD02G1161700' => 'mdo', 'MD03G1292200' => 'mdo', 'MD06G1001100' => 'mdo', 'MD06G1091900' => 'mdo', 'MD11G1306200' => 'mdo', 'MD12G1245100' => 'mdo', 'MD13G1209700' => 'mdo', 'MD15G1275900' => 'mdo', 'MD16G1212500' => 'mdo', 'MD16G1212600' => 'mdo', 'Medtr1g044210' => 'mtr', 'Medtr1g073840' => 'mtr', 'Medtr1g079790' => 'mtr', 'Medtr4g031150' => 'mtr', 'Medtr4g134880' => 'mtr', 'Medtr7g109150' => 'mtr', 'Medtr7g116330' => 'mtr', 'MELO3C003906.2' => 'cme', 'MELO3C006451.2' => 'cme', 'MELO3C015961.2' => 'cme', 'MELO3C029088.2' => 'cme', 'Migut.D00127' => 'egut', 'Migut.G00454' => 'egut', 'Migut.M00655' => 'egut', 'Migut.N00253' => 'egut', 'MSTRG.21895' => 'ama', 'MSTRG.22244' => 'ama', 'MSTRG.24693' => 'ama', 'MSTRG.6710' => 'ama', 'MSTRG.9918' => 'ama', 'Nitab4.5_0000116g0290' => 'nta', 'Nitab4.5_0000302g0110' => 'nta', 'Nitab4.5_0000342g0260' => 'nta', 'Nitab4.5_0000342g0270' => 'nta', 'Nitab4.5_0000505g0130' => 'nta', 'Nitab4.5_0000639g0220' => 'nta', 'Nitab4.5_0000687g0110' => 'nta', 'Nitab4.5_0000803g0010' => 'nta', 'Nitab4.5_0000856g0210' => 'nta', 'Nitab4.5_0001924g0030' => 'nta', 'Nitab4.5_0003721g0020' => 'nta', 'Nitab4.5_0004443g0040' => 'nta', 'Nitab4.5_0004443g0050' => 'nta', 'Nitab4.5_0004928g0060' => 'nta', 'Nitab4.5_0005080g0010' => 'nta', 'Nitab4.5_0006096g0020' => 'nta', 'Nn1g00492' => 'nnu', 'Nn1g00493' => 'nnu', 'Nn1g02686' => 'nnu', 'Nn1g04790' => 'nnu', 'Nn1g05976' => 'nnu', 'Nn1g06196' => 'nnu', 'Nn2g11219' => 'nnu', 'Nn2g13722' => 'nnu', 'Nn3g19595' => 'nnu', 'Nn3g20794' => 'nnu', 'Nn3g21787' => 'nnu', 'Nn4g23447' => 'nnu', 'Nn4g25723' => 'nnu', 'Nn6g31965' => 'nnu', 'Oeu003502.2' => 'oeu', 'Oeu006449.1' => 'oeu', 'Oeu033247.1' => 'oeu', 'Oeu048713.1' => 'oeu', 'Oeu048714.1' => 'oeu', 'Oeu058333.2' => 'oeu', 'Oeu058430.2' => 'oeu', 'Os02g0820900' => 'osa', 'Os03g0701700' => 'osa', 'Os04g0169100' => 'osa', 'Os05g0155200' => 'osa', 'Os07g0259100' => 'osa', 'Peaxi162Scf00000g00584' => 'pax', 'Peaxi162Scf00001g34002' => 'pax', 'Peaxi162Scf00024g00105' => 'pax', 'Peaxi162Scf00024g00157' => 'pax', 'Peaxi162Scf00111g00820' => 'pax', 'Peaxi162Scf00120g00517' => 'pax', 'Peaxi162Scf00325g00034' => 'pax', 'Peaxi162Scf00362g01179' => 'pax', 'Peaxi162Scf00519g00115' => 'pax', 'Peaxi162Scf56606g00001' => 'pax', 'PGR004G1367' => 'pgr', 'PGR004G2533' => 'pgr', 'PGR031G1891' => 'pgr', 'PGR031G2033' => 'pgr', 'PGR044G0741' => 'pgr', 'PGSC0003DMG400007843' => 'stu', 'PGSC0003DMG400016284' => 'stu', 'PGSC0003DMG400017186' => 'stu', 'PGSC0003DMG400023402' => 'stu', 'PGSC0003DMG400027651' => 'stu', 'PGSC0003DMG400028694' => 'stu', 'PGSC0003DMG400028698' => 'stu', 'PGSC0003DMG400028699' => 'stu', 'PGSC0003DMG400031819' => 'stu', 'Phvul.001G210200' => 'pvu', 'Phvul.006G106300' => 'pvu', 'Phvul.006G106400' => 'pvu', 'Phvul.007G129500' => 'pvu', 'Phvul.007G271700' => 'pvu', 'Phvul.011G216400' => 'pvu', 'Potri.001G204200' => 'ptr', 'Potri.002G201500' => 'ptr', 'Potri.003G032300' => 'ptr', 'Potri.008G164400' => 'ptr', 'Potri.010G074300' => 'ptr', 'Potri.013G044100' => 'ptr', 'Potri.019G014300' => 'ptr', 'Pp3c10_15350' => 'ppa', 'Pp3c13_1440' => 'ppa', 'Pp3c16_13660' => 'ppa', 'Pp3c1_29330' => 'ppa', 'Pp3c27_3830' => 'ppa', 'Pp3c3_1510' => 'ppa', 'Pp3c4_27560' => 'ppa', 'Pp3c4_27580' => 'ppa', 'PRCOL_00002873' => 'pco', 'PRCOL_00005177' => 'pco', 'Prupe.1G034300' => 'ppe', 'Prupe.1G556000' => 'ppe', 'Prupe.6G348000' => 'ppe', 'Prupe.8G265200' => 'ppe', 'Psat0s3757g0080' => 'psa', 'Psat0s408g0040' => 'psa', 'Psat3g005960' => 'psa', 'Psat3g006160' => 'psa', 'Psat3g021360' => 'psa', 'Psat5g187920' => 'psa', 'Psat6g108600' => 'psa', 'Psat6g134240' => 'psa', 'Psat7g020600' => 'psa', 'Psat7g227800' => 'psa', 'PSO017G0241' => 'pso', 'PSO017G7125' => 'pso', 'PSO063G6221' => 'pso', 'PSO170G3142' => 'pso', 'PSO339G3578' => 'pso', 'PSO513G0126' => 'pso', 'PSO541G0402' => 'pso', 'PSO675G5942' => 'pso', 'PSO764G0198' => 'pso', 'QL01p042007' => 'qlo', 'QL01p042012' => 'qlo', 'QL03p032139' => 'qlo', 'QL03p032324' => 'qlo', 'QL06p016515' => 'qlo', 'QL12p004243' => 'qlo', 'QL12p027757' => 'qlo', 'RcHm_v2.0_Chr2g0118071' => 'rch', 'RcHm_v2.0_Chr3g0450101' => 'rch', 'RcHm_v2.0_Chr4g0391281' => 'rch', 'RcHm_v2.0_Chr6g0274471' => 'rch', 'RcHm_v2.0_Chr6g0294491' => 'rch', 'RcHm_v2.0_Chr7g0226881' => 'rch', 'Rhsim04G0188600' => 'rsi', 'Rhsim05G0175700' => 'rsi', 'Rhsim07G0104700' => 'rsi', 'Rhsim11G0072400' => 'rsi', 'Rhsim13G0008200' => 'rsi', 'Sabra01G0157500' => 'sbr', 'Sabra02G0157500' => 'sbr', 'Sabra03G0018600' => 'sbr', 'Sabra14G0093900' => 'sbr', 'SalBow2G3630' => 'sbo', 'SalBow3G1748' => 'sbo', 'SalBow4G0048' => 'sbo', 'SalBow6G0187' => 'sbo', 'Sc01g0002690' => 'sci', 'Sc05g0003540' => 'sci', 'Sc17g0002850' => 'sci', 'Sc19g0003480' => 'sci', 'Sc20g0000520' => 'sci', 'Sed0000172' => 'sed', 'Sed0001436' => 'sed', 'Sed0008672' => 'sed', 'Sed0010795' => 'sed', 'Sed0026003' => 'sed', 'SEGI_20904' => 'sgi', 'SEGI_27887' => 'sgi', 'SEGI_31678' => 'sgi', 'SGA_v2.0_scaffold1G00344' => 'sas', 'SGA_v2.0_scaffold1G00345' => 'sas', 'SGA_v2.0_scaffold272G46382' => 'sas', 'SGA_v2.0_scaffold304G47923' => 'sas', 'SGA_v2.0_scaffold308G48095' => 'sas', 'SGA_v2.0_scaffold88G27271' => 'sas', 'SGA_v2.0_scaffold8G04209' => 'sas', 'SGA_v2.0_scaffold91G28125' => 'sas', 'SHI21371' => 'shi', 'SHI21372' => 'shi', 'SMO145G0065' => 'smo', 'SMO203G0219' => 'smo', 'SMO347G0591' => 'smo', 'SMO351G0190' => 'smo', 'Solyc03g123450.1' => 'sly', 'Solyc04g025660.1' => 'sly', 'Solyc04g049990.2' => 'sly', 'Solyc04g064840.1' => 'sly', 'Solyc05g055070.4' => 'sly', 'Solyc06g036450.1' => 'sly', 'Solyc06g051610.1' => 'sly', 'Solyc06g053710.3' => 'sly', 'Solyc07g056580.3' => 'sly', 'Solyc08g068360.1' => 'sly', 'Solyc09g011680.1' => 'sly', 'Solyc09g065310.1' => 'sly', 'Solyc09g075440.4' => 'sly', 'Solyc09g082910.2' => 'sly', 'Solyc09g089610.3' => 'sly', 'Solyc11g006150.1' => 'sly', 'Solyc11g006160.3' => 'sly', 'Solyc11g006180.2' => 'sly', 'Solyc11g065590.1' => 'sly', 'Solyc12g011330.4' => 'sly', 'Solyc12g038690.1' => 'sly', 'Sopen05g033530' => 'spe', 'Sopen06g018820' => 'spe', 'Sopen07g029930' => 'spe', 'Sopen09g030220' => 'spe', 'Sopen09g032550' => 'spe', 'Sopen11g002090' => 'spe', 'Sopen11g002110' => 'spe', 'Sopen12g006660' => 'spe', 'Sp1g03120' => 'spa', 'Sp1g03130' => 'spa', 'Sp3g03420' => 'spa', 'Sp3g20800' => 'spa', 'Sp4g29460' => 'spa', 'Sp5g21360' => 'spa', 'SpUn0338_0010' => 'spa', 'TAR362G0558' => 'tar', 'TAR365G0145' => 'tar', 'TAR365G1057' => 'tar', 'TAR369G0450' => 'tar', 'TAR626G1387' => 'tar', 'TAR627G0918' => 'tar', 'TAR636G1146' => 'tar', 'TAR636G2421' => 'tar', 'THA.LOC104799250' => 'tha', 'THA.LOC104801091' => 'tha', 'THA.LOC104802182' => 'tha', 'THA.LOC104808607' => 'tha', 'THA.LOC104817476' => 'tha', 'THA.LOC104822604' => 'tha', 'THA.LOC104827290' => 'tha', 'THA.LOC104827701' => 'tha', 'THA.LOC104827702' => 'tha', 'Thecc.01G306100' => 'tca', 'Thecc.04G249200' => 'tca', 'Thecc.05G276600' => 'tca', 'Thecc.07G147200' => 'tca', 'Thhalv10001362m.g' => 'esa', 'Thhalv10007018m.g' => 'esa', 'Thhalv10018186m.g' => 'esa', 'Thhalv10020114m.g' => 'esa', 'Thhalv10020124m.g' => 'esa', 'TPR.G10258' => 'tpr', 'TPR.G15866' => 'tpr', 'TPR.G26450' => 'tpr', 'TPR.G34112' => 'tpr', 'TPR.G6997' => 'tpr', 'TPR.G9631' => 'tpr', 'TWI09G1446' => 'twi', 'TWI14G0514' => 'twi', 'TWI15G0860' => 'twi', 'TWI38G0669' => 'twi', 'TWI53G0662' => 'twi', 'TWI53G0808' => 'twi', 'TWI56G0600' => 'twi', 'TWI59G0732' => 'twi', 'TWI73G0355' => 'twi', 'unitig_21.g20337' => 'ugi', 'unitig_32.g10835' => 'ugi', 'unitig_32.g11715' => 'ugi', 'unitig_748.g8315' => 'ugi', 'vmacro08444' => 'vma', 'vmacro16036' => 'vma', 'vmacro20005' => 'vma', 'VMungo0540G1041' => 'vmu', 'VMungo0540G2302' => 'vmu', 'VMungo0720G1049' => 'vmu', 'VMungo0720G1058' => 'vmu', 'VMungo1127G0438' => 'vmu', 'VMungo1167G0001' => 'vmu', 'VMungo1383G1430' => 'vmu', 'Zm00001eb007080' => 'zma', 'Zm00001eb054170' => 'zma', 'Zm00001eb069370' => 'zma', 'Zm00001eb088180' => 'zma', 'Zm00001eb151260' => 'zma', 'Zm00001eb191130' => 'zma', 'Zm00001eb205280' => 'zma', 'Zm00001eb215500' => 'zma', 'Zm00001eb216810' => 'zma', 'Zm00001eb282800' => 'zma', 'Zm00001eb323290' => 'zma', 'Zm00001eb373070' => 'zma', 'Zm00001eb419810' => 'zma' ) $gf_id = 'HOM05D000923' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000923' ) $data_identifier = 'HOM05D000923' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 14, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 4, 'cqu' => (int) 11, 'bca' => (int) 11, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 9, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 4, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 11, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 10, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 16, 'ghi' => (int) 16, 'gra' => (int) 8, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 3, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 6, 'lal' => (int) 7, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 14, 'oeu' => (int) 7, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 8, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 10, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 21, 'spe' => (int) 8, 'spa' => (int) 7, 'tar' => (int) 8, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 9, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 7, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1